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1

The changing mouse embryo transcriptome at whole tissue and single-cell resolution

He, Peng, Williams, Brian A., Trout, Diane, Marinov, Georgi K., Amrhein, Henry, Berghella, Libera, Goh, Say-Tar, Plajzer-Frick, Ingrid, Afzal, Veena, Pennacchio, Len A., Dickel, Diane E., Visel, Axel,

Journal:

Year:

2020

File:

PDF, 113.10 MB

2020

2

Ultraconservation identifies a small subset of extremely constrained developmental enhancers

Rubin, Edward M, Pennacchio, Len A, Visel, Axel, Prabhakar, Shyam, Akiyama, Jennifer A, Shoukry, Malak, Lewis, Keith D, Holt, Amy, Plajzer-Frick, Ingrid, Afzal, Veena

Journal:

Nature Genetics

Year:

2008

Language:

english

File:

PDF, 252 KB

english, 2008

3

Rapid and Pervasive Changes in Genome-wide Enhancer Usage during Mammalian Development

Nord, Alex S., Blow, Matthew J., Attanasio, Catia, Akiyama, Jennifer A., Holt, Amy, Hosseini, Roya, Phouanenavong, Sengthavy, Plajzer-Frick, Ingrid, Shoukry, Malak, Afzal, Veena, Rubenstein, John L.R.

Journal:

Year:

2013

Language:

english

File:

PDF, 3.00 MB

english, 2013

4

Single-nucleus analysis of accessible chromatin in developing mouse forebrain reveals cell-type-specific transcriptional regulation

Preissl, Sebastian, Fang, Rongxin, Huang, Hui, Zhao, Yuan, Raviram, Ramya, Gorkin, David U., Zhang, Yanxiao, Sos, Brandon C., Afzal, Veena, Dickel, Diane E., Kuan, Samantha, Visel, Axel, Pennacchio, L

Journal:

Nature Neuroscience

Year:

2018

Language:

english

File:

PDF, 4.12 MB

english, 2018

5

Comparative genomic analysis reveals a distant liver enhancer upstream of theCOUP-TFIIgene

Nadine Baroukh, Nadav Ahituv, Jessie Chang, Malak Shoukry, Veena Afzal, Edward M. Rubin, Len A. Pennacchio

Journal:

Mammalian Genome

Year:

2005

Language:

english

File:

PDF, 171 KB

english, 2005

6

Megabase deletions of gene deserts result in viable mice

Nóbrega, Marcelo A., Zhu, Yiwen, Plajzer-Frick, Ingrid, Afzal, Veena, Rubin, Edward M.

Journal:

Year:

2004

Language:

english

File:

PDF, 447 KB

english, 2004

7

Targeted deletion of the 9p21 non-coding coronary artery disease risk interval in mice

Visel, Axel, Zhu, Yiwen, May, Dalit, Afzal, Veena, Gong, Elaine, Attanasio, Catia, Blow, Matthew J., Cohen, Jonathan C., Rubin, Edward M., Pennacchio, Len A.

Journal:

Year:

2010

Language:

english

File:

PDF, 433 KB

english, 2010

8

Tenascin-X deficiency mimics Ehlers-Danlos syndrome in mice through alteration of collagen deposition

Mao, Jau Ren, Taylor, Glen, Dean, Willow B., Wagner, Diane R., Afzal, Veena, Lotz, Jeffrey C., Rubin, Edward M., Bristow, James

Journal:

Nature Genetics

Year:

2002

Language:

english

File:

PDF, 547 KB

english, 2002

9

Cultured human lymphocytes proliferate faster in medium lacking fetal calf serum and antibiotics

Sheldon Wolff, Veena Afzal, Patricia Brown Lindquist

Journal:

Mutation Research/Fundamental and Molecular Mechanisms of Mutagenesis

Year:

1984

Language:

english

File:

PDF, 444 KB

english, 1984

10

Adaptive response of human lymphocytes for the repair of radon-induced chromosomal damage

Sheldon Wolff, Rick Jostes, Frederick T. Cross, T.Edmund Hui, Veena Afzal, John K. Wiencke

Journal:

Mutation Research/Fundamental and Molecular Mechanisms of Mutagenesis

Year:

1991

Language:

english

File:

PDF, 555 KB

english, 1991

11

Depletion of cellular polyamines by α-difluoromethylornithine increases 1,3-bis(20chloroethyl)-1-nitrosourea-induced sister-chromatid exchanges

Sheldon Wolff, Luzviminda Feeney, Veena Afzal

Journal:

Mutation Research/Fundamental and Molecular Mechanisms of Mutagenesis

Year:

1993

Language:

english

File:

PDF, 594 KB

english, 1993

12

In vivo characterization of a vertebrate ultraconserved enhancer

Francis Poulin, Marcelo A. Nobrega, Ingrid Plajzer-Frick, Amy Holt, Veena Afzal, Edward M. Rubin, Len A. Pennacchio

Journal:

Year:

2005

Language:

english

File:

PDF, 782 KB

english, 2005

13

Functional autonomy of distant-acting human enhancers

Axel Visel, Jennifer A. Akiyama, Malak Shoukry, Veena Afzal, Edward M. Rubin, Len A. Pennacchio

Journal:

Year:

2009

Language:

english

File:

PDF, 681 KB

english, 2009

14

10.1038/ni0901-842

Mohrs, Markus, Blankespoor, Catherine M., Wang, Zhi-En, Loots, Gaby G., Afzal, Veena, Hadeiba, Husein, Shinkai, Kanade, Rubin, Edward M., Locksley, Richard M.

Journal:

Nature Immunology

Year:

2001

Language:

english

File:

PDF, 578 KB

english, 2001

15

[IEEE 2012 7th International Symposium on Wireless and Pervasive Computing (ISWPC) - Dalian, China (2012.07.3-2012.07.5)] ISWPC 2012 proceedings - A hybrid routing protocol for wireless sensor networks with mobile sinks

Safdar, Veena, Bashir, Faisal, Hamid, Zara, Afzal, Hammad, Pyun, Jae Young

Year:

2012

Language:

english

File:

PDF, 330 KB

english, 2012

16

Function-based identification of mammalian enhancers using site-specific integration

Dickel, Diane E, Zhu, Yiwen, Nord, Alex S, Wylie, John N, Akiyama, Jennifer A, Afzal, Veena, Plajzer-Frick, Ingrid, Kirkpatrick, Aileen, Göttgens, Berthold, Bruneau, Benoit G, Visel, Axel, Pennacchio,

Journal:

Year:

2014

Language:

english

File:

PDF, 793 KB

english, 2014

17

Segregation of DNA Polynucleotide Strands into Sister Chromatids and the Use of Endoreduplicated Cells to Track Sister Chromatid Exchanges Induced by Crosslinks, Alkylations, or X-Ray Damage

Sheldon Wolff and Veena Afzal

Journal:

Proceedings of the National Academy of Sciences

Year:

1996

Language:

english

File:

PDF, 1.08 MB

english, 1996

18

Supplement 3: Environmental Mutagenesis in Human Populations at Risk || Indications of Repair of Radon-Induced Chromosome Damage in Human Lymphocytes: An Adaptive Response Induced by Low Doses of X-Rays

Sheldon Wolff, Veena Afzal, Rick F. Jostes and John K. Wiencke

Journal:

Environmental Health Perspectives

Year:

1993

Language:

english

File:

PDF, 1.28 MB

english, 1993

19

Characterization of the Adaptive Response to Ionizing Radiation Induced by Low Doses of X Rays to Human Lymphocytes

Jeffery D. Shadley, Veena Afzal and Sheldon Wolff

Journal:

Radiation Research

Year:

1987

Language:

english

File:

PDF, 253 KB

english, 1987

20

Large-scale discovery of enhancers from human heart tissue

May, Dalit, Blow, Matthew J, Kaplan, Tommy, McCulley, David J, Jensen, Brian C, Akiyama, Jennifer A, Holt, Amy, Plajzer-Frick, Ingrid, Shoukry, Malak, Wright, Crystal, Afzal, Veena, Simpson, Paul C, R

Journal:

Nature Genetics

Year:

2011

Language:

english

File:

PDF, 668 KB

english, 2011

21

Evidence that the [ 3 H]thymidine-induced adaptive response of human lymphocytes to subsequent doses of X-rays involves the induction of a chromosomal repair mechanism

Wiencke, John K., Afzal, Veena, Olivieri, Gregorio, Wolff, Sheldon

Journal:

Year:

1986

Language:

english

File:

PDF, 573 KB

english, 1986

22

Human Lymphocytes Exposed to Low Doses of Ionizing Radiations Become Refractory to High Doses of Radiation as Well as to Chemical Mutagens that Induce Double-strand Breaks in DNA

Wolff, Sheldon, Afzal, Veena, Wiencke, J.K., Olivieri, Gregorio, Michaeli, A.

Journal:

International Journal of Radiation Biology

Year:

1988

Language:

english

File:

PDF, 517 KB

english, 1988

23

Image-guided fine-needle aspiration of retroperitoneal masses: The role of the cytopathologist

Ansari, HenaA, Ahmad, Ibne, Mehdi, Ghazala, Maheshwari, Veena, Afzal, Sheerin

Journal:

Journal of Cytology

Year:

2013

Language:

english

File:

PDF, 1.76 MB

english, 2013

24

Image-guided fine-needle aspiration cytology of ovarian tumors: An assessment of diagnostic efficacy

Ansari, HenaA, Ansari, Maryem, Mehdi, Ghazala, Maheshwari, Veena, Afzal, Sheerin

Journal:

Journal of Cytology

Year:

2010

Language:

english

File:

PDF, 1.13 MB

english, 2010

25

Tissue-Specific RNA Expression Marks Distant-Acting Developmental Enhancers

Wu, Han, Nord, Alex S., Akiyama, Jennifer A., Shoukry, Malak, Afzal, Veena, Rubin, Edward M., Pennacchio, Len A., Visel, Axel, Barsh, Gregory S.

Journal:

Year:

2014

Language:

english

File:

PDF, 2.65 MB

english, 2014

26

Deletion of Ultraconserved Elements Yields Viable Mice

Ahituv, Nadav, Zhu, Yiwen, Visel, Axel, Holt, Amy, Afzal, Veena, Pennacchio, Len A., Rubin, Edward M.

Journal:

Year:

2007

Language:

english

File:

PDF, 314 KB

english, 2007

27

Antipain-mediated suppression of X-ray-induced chromosomal aberrations in human lymphocytes

Afzal, Veena, Wiencke, John K., Wolff, Sheldon

Journal:

Year:

1989

Language:

english

File:

PDF, 359 KB

english, 1989

28

Chromatid exchanges may be induced by damage in sites of transcriptional activity

Cleaver, James E., Mitchell, David L., Feeney, Luz, Afzal, Veena

Journal:

Year:

1996

Language:

english

File:

PDF, 475 KB

english, 1996

29

Sister chromatid exchanges in cells defective in mismatch, post-replication and excision repair

Afzal, Veena, Feeney, Luzviminda, Thomas, Greg H., Volpe, John P. G., Cleaver, James E.

Journal:

Year:

1995

Language:

english

File:

PDF, 570 KB

english, 1995

30

Nitroxyl Spin Label Contrast Enhancers for Magnetic Resonance Imaging

Afzal, Veena, Brasch, Robert C., Nitecki, Danute E., Wolff, Sheldon

Journal:

Investigative Radiology

Year:

1984

File:

PDF, 361 KB

1984

31

Author Correction: Single-nucleus analysis of accessible chromatin in developing mouse forebrain reveals cell-type-specific transcriptional regulation

Preissl, Sebastian, Fang, Rongxin, Huang, Hui, Zhao, Yuan, Raviram, Ramya, Gorkin, David U., Zhang, Yanxiao, Sos, Brandon C., Afzal, Veena, Dickel, Diane E., Kuan, Samantha, Visel, Axel, Pennacchio, L

Journal:

Nature Neuroscience

Year:

2018

File:

PDF, 546 KB

2018

32

Limb-Enhancer Genie: An accessible resource of accurate enhancer predictions in the developing limb

Monti, Remo, Barozzi, Iros, Osterwalder, Marco, Lee, Elizabeth, Kato, Momoe, Garvin, Tyler H., Plajzer-Frick, Ingrid, Pickle, Catherine S., Akiyama, Jennifer A., Afzal, Veena, Beerenwinkel, Niko, Dick

Journal:

PLoS Computational Biology

Year:

2017

Language:

english

File:

PDF, 5.24 MB

english, 2017

33

Supervised enhancer prediction with epigenetic pattern recognition and targeted validation

Sethi, Anurag, Gu, Mengting, Gumusgoz, Emrah, Chan, Landon, Yan, Koon-Kiu, Rozowsky, Joel, Barozzi, Iros, Afzal, Veena, Akiyama, Jennifer A., Plajzer-Frick, Ingrid, Yan, Chengfei, Novak, Catherine S.,

Journal:

Year:

2020

File:

PDF, 5.27 MB

2020